You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
 
 
 
 
 
 
Yuri Victorovich d17e67375d biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale genome searching 5 days ago
..
abyss biology/abyss: Add test target 2 weeks ago
ad2vcf biology/ad2vcf: Update to 0.1.6 2 months ago
artemis biology: remove 'Created by' lines 3 weeks ago
avida biology: remove 'Created by' lines 3 weeks ago
babel biology: remove 'Created by' lines 3 weeks ago
bamtools devel/jsoncpp: Update to 1.9.4 -> 1.9.5 9 months ago
bamutil Fix CONFLICTS entries of multiple ports 7 months ago
bbmap biology/bbmap: Update to 38.92 12 months ago
bcftools biology: remove 'Created by' lines 3 weeks ago
bedtools One more small cleanup, forgotten yesterday. 1 year ago
bfc biology/bfc: Correct sequencing errors from Illumina sequencing data 12 months ago
bio-mocha biology/bio-mocha: Update bcftools submodule to 1.15 6 months ago
bioawk One more small cleanup, forgotten yesterday. 1 year ago
biococoa One more small cleanup, forgotten yesterday. 1 year ago
biolibc biology/biolibc: Update to 0.2.3 2 months ago
biolibc-tools biology: remove 'Created by' lines 3 weeks ago
bioparser biology/bioparser: Update 3.0.12-2 -> 3.0.15 11 months ago
biosig biology/biosig: Update 2.4.1 -> 2.4.2 2 months ago
biosoup One more small cleanup, forgotten yesterday. 1 year ago
biostar-tools biology/biostar-tools: Allow package build on non-amd64 systems 8 months ago
bolt-lmm devel/boost-all: bump all library consumers after boost upgrade 3 months ago
bowtie biology/bowtie: enable on riscv64 8 months ago
bowtie2 biology: remove 'Created by' lines 3 weeks ago
bwa biology/bwa: don't use GCC on powerpc64le 8 months ago
canu devel/boost-all: bump all library consumers after boost upgrade 3 months ago
cd-hit biology/cd-hit: check for omp.h on all architectures 4 months ago
cdbfasta biology: remove 'Created by' lines 3 weeks ago
checkm biology/checkm: Update 1.1.11 -> 1.2.0 3 months ago
clustal-omega One more small cleanup, forgotten yesterday. 1 year ago
clustalw biology: remove 'Created by' lines 3 weeks ago
cufflinks biology/cufflinks: Unbreak 2 weeks ago
cytoscape biology/cytoscape: mark unconditionally BROKEN 1 year ago
ddocent cleanup: drop support for EOL FreeBSD 11.X 11 months ago
diamond biology/diamond: Update to 2.0.15 4 months ago
dsr-pdb devel/boost-all: bump all library consumers after boost upgrade 3 months ago
edlib biology/edlib: Update 1.2.6.20201202 -> 1.2.7 12 months ago
emboss biology: remove 'Created by' lines 3 weeks ago
erminej biology/erminej: Analyses of gene sets, e.g. gene expression profiling 1 year ago
exonerate biology: remove 'Created by' lines 3 weeks ago
fasta biology: remove 'Created by' lines 3 weeks ago
fasta3 biology: remove 'Created by' lines 3 weeks ago
fastahack One more small cleanup, forgotten yesterday. 1 year ago
fastdnaml biology: remove 'Created by' lines 3 weeks ago
fastool One more small cleanup, forgotten yesterday. 1 year ago
fastp biology/fastp: Add USE_GCC to hack around seg faults 7 months ago
fastq-trim biology/fastq-trim: Update to 0.1.1.4 5 months ago
fastqc One more small cleanup, forgotten yesterday. 1 year ago
fasttree biology/fasttree: check for omp.h on all architectures 4 months ago
fastx-toolkit Update CONFLICTS definitions in categories a* to c* 6 months ago
figtree One more small cleanup, forgotten yesterday. 1 year ago
flash biology/flash: Fast Length Adjustment of SHort reads 12 months ago
fluctuate biology: remove 'Created by' lines 3 weeks ago
freebayes biology/freebayes: Update to 1.3.6 6 months ago
garlic biology: remove 'Created by' lines 3 weeks ago
gatk biology/gatk: Use Java 17 instead of EOLed Java 12 3 months ago
gcta biology/gcta: Use bundled version of eigen3 1 month ago
gemma math/gsl: bump portrevision of consumers after update to 2.7.1 7 months ago
generand One more small cleanup, forgotten yesterday. 1 year ago
gff2ps biology: remove 'Created by' lines 3 weeks ago
gffread biology/gffread: remove local poudriere files 5 months ago
gmap biology: remove 'Created by' lines 3 weeks ago
gperiodic cleanup: remove '$MCom' tag 3 weeks ago
graphlan One more small cleanup, forgotten yesterday. 1 year ago
groopm biology/groopm: Fix build with setuptools 58.0.0+ 5 months ago
haplohseq devel/boost-all: bump all library consumers after boost upgrade 3 months ago
hhsuite biology/hhsuite: Fix build on some architectures 1 week ago
hisat2 biology/hisat2: enable on riscv64 8 months ago
hmmer biology: remove 'Created by' lines 3 weeks ago
htslib biology: remove 'Created by' lines 3 weeks ago
hyphy biology/hyphy: Update 2.5.40 -> 2.5.41 6 days ago
igv cleanup: drop support for EOL FreeBSD 11.X 11 months ago
infernal */*: fix trailing whitespace in pkg-descr's 4 months ago
iolib biology: remove 'Created by' lines 3 weeks ago
iqtree devel/boost-all: bump all library consumers after boost upgrade 3 months ago
jalview biology: remove 'Created by' lines 3 weeks ago
jellyfish *: Clean up some things 10 months ago
kallisto science/hdf5: bump PORTREVISION of consumers 3 weeks ago
kmcp biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale genome searching 5 days ago
lamarc biology: remove 'Created by' lines 3 weeks ago
libbigwig One more small cleanup, forgotten yesterday. 1 year ago
libgff biology/libgff: GFF/GTF parsing library based on GCLib 8 months ago
libgtextutils One more small cleanup, forgotten yesterday. 1 year ago
libneurosim biology/libneurosim: New port: Common interfaces for neuronal simulators 10 months ago
libnuml biology/{,py-}libnuml: Update 1.1.5 -> 1.1.6 4 months ago
libsbml biology: remove 'Created by' lines 3 weeks ago
libsedml biology/{,py-}libsedml: Update 2.0.31 -> 2.0.32 2 months ago
linux-foldingathome biology: remove 'Created by' lines 3 weeks ago
mafft biology: remove 'Created by' lines 3 weeks ago
mapm3 biology: remove 'Created by' lines 3 weeks ago
migrate biology: remove 'Created by' lines 3 weeks ago
minimap2 biology/minimap2: Update to 2.24 7 months ago
mmseqs2 biology/mmseqs2: Not require OpenMP on systems where OpenMP isn't enabled 3 weeks ago
molden biology/molden: Update 6.7 -> 7.1 3 weeks ago
mothur biology/mothur: Update 1.47.0 -> 1.48.0 3 months ago
mrbayes biology: remove 'Created by' lines 3 weeks ago
mummer biology: remove 'Created by' lines 3 weeks ago
muscle biology: remove 'Created by' lines 3 weeks ago
ncbi-blast+ devel/grpc: Update to 1.48.0 2 weeks ago
ncbi-cxx-toolkit biology/ncbi-cxx-toolkit: Broken on armv6 6 days ago
ncbi-entrez-direct all: Bump PORTREVISION after Go update 1 week ago
ncbi-toolkit biology: remove 'Created by' lines 3 weeks ago
ncbi-vdb science/hdf5: bump PORTREVISION of consumers 3 weeks ago
ngs-sdk biology/ngs-sdk: Broken on armv6, armv7 3 weeks ago
p5-AcePerl biology: remove 'Created by' lines 3 weeks ago
p5-Bio-ASN1-EntrezGene biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Cluster biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Coordinate biology: remove 'Created by' lines 3 weeks ago
p5-Bio-DB-EMBL biology: remove 'Created by' lines 3 weeks ago
p5-Bio-DB-NCBIHelper biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Das biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Das-Lite biology: remove 'Created by' lines 3 weeks ago
p5-Bio-FeatureIO biology: remove 'Created by' lines 3 weeks ago
p5-Bio-GFF3 biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Glite biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Graphics biology: remove 'Created by' lines 3 weeks ago
p5-Bio-MAGETAB biology: remove 'Created by' lines 3 weeks ago
p5-Bio-NEXUS biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Phylo biology: remove 'Created by' lines 3 weeks ago
p5-Bio-SCF biology: remove 'Created by' lines 3 weeks ago
p5-Bio-Variation biology: remove 'Created by' lines 3 weeks ago
p5-BioPerl biology: remove 'Created by' lines 3 weeks ago
p5-BioPerl-Run biology: remove 'Created by' lines 3 weeks ago
p5-TrimGalore One more small cleanup, forgotten yesterday. 1 year ago
p5-transdecoder One more small cleanup, forgotten yesterday. 1 year ago
paml biology: remove 'Created by' lines 3 weeks ago
pbbam devel/boost-all: bump all library consumers after boost upgrade 3 months ago
pbseqan *: fix tab vs. space issues, and comments according to the guide. 10 months ago
peak-classifier biology/peak-classifier: Update to 0.1.4 2 months ago
pear-merger One more small cleanup, forgotten yesterday. 1 year ago
phrap Deorbit RESTRICTED && NO_CDROM, part two. 1 year ago
phred biology: remove 'Created by' lines 3 weeks ago
phyml biology: remove 'Created by' lines 3 weeks ago
picard-tools Update CONFLICTS definitions in categories a* to c* 6 months ago
plink Update CONFLICTS definitions in categories a* to c* 6 months ago
pooler biology/pooler: Update to 1.85 1 month ago
primer3 biology: remove 'Created by' lines 3 weeks ago
prodigal One more small cleanup, forgotten yesterday. 1 year ago
prodigy-lig One more small cleanup, forgotten yesterday. 1 year ago
protomol biology: remove 'Created by' lines 3 weeks ago
psi88 biology: remove 'Created by' lines 3 weeks ago
py-Genesis-PyAPI One more small cleanup, forgotten yesterday. 1 year ago
py-PySCeS biology/py-PySCeS: Update 1.0.1 -> 1.0.2 3 months ago
py-bcbio-gff biology/py-bcbio-gff: Read and write Generic Feature Format (GFF) 6 months ago
py-biom-format One more small cleanup, forgotten yesterday. 1 year ago
py-biopython biology: remove 'Created by' lines 3 weeks ago
py-bx-python biology: remove 'Created by' lines 3 weeks ago
py-crossmap biology/py-crossmap: Fix build with setuptools 58.0.0+ 5 months ago
py-cutadapt biology/py-cutadapt: fix tests by adding missing test depend 4 months ago
py-deeptools biology/py-deeptools: User-friendly tools for exploring deep-sequencing data 10 months ago
py-deeptoolsintervals biology/py-deeptoolsintervals: Python interface for deepTools interval trees 10 months ago
py-dna-features-viewer biology/py-dna-features-viewer: Update to 3.1.1 3 months ago
py-dnaio biology/py-dnaio: Update to 0.5.1 1 year ago
py-ete3 biology/py-ete3: Add tests 6 days ago
py-gffutils biology/py-gffutils: Update 0.10.1 -> 0.11.0 2 months ago
py-goatools biology/py-goatools: Tools for processing and visualizing Gene Ontology terms 1 year ago
py-gtfparse One more small cleanup, forgotten yesterday. 1 year ago
py-hits One more small cleanup, forgotten yesterday. 1 year ago
py-libnuml biology/{,py-}libnuml: Update 1.1.5 -> 1.1.6 4 months ago
py-libsedml biology/{,py-}libsedml: Update 2.0.31 -> 2.0.32 2 months ago
py-loompy biology/py-loompy: Update 3.0.6 -> 3.0.7 5 months ago
py-macs2 One more small cleanup, forgotten yesterday. 1 year ago
py-mrcfile biology/py-mrcfile: Update 1.4.0 -> 1.4.2 2 weeks ago
py-multiqc math/py-matplotlib: chase minimum Python version in dependent ports 1 year ago
py-ont-fast5-api biology/py-ont-fast5-api: Update to 4.0.2 5 months ago
py-orange3-bioinformatics cleanup: remove transitive py27 deprecation (www/qt5-webengine) 7 months ago
py-orange3-single-cell cleanup: remove transitive py27 deprecation (www/qt5-webengine) 7 months ago
py-pandas-charm One more small cleanup, forgotten yesterday. 1 year ago
py-py2bit biology/py-py2bit: Python interface for 2bit packed nucleotide files 10 months ago
py-pybigwig biology/py-bigwig: Rename to biology/py-pybigwig 10 months ago
py-pyfaidx biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5 1 year ago
py-pysam biology/py-pysam: Remove BROKEN lines 3 weeks ago
py-python-libsbml biology/py-python-libsbml: limit supported python versions, fix build 9 months ago
py-pywgsim biology/py-pywgsim: Modified wgsim genomic data simulator 11 months ago
py-resdk biology/py-resdk: Update 14.1.0 -> 15.0.0 2 months ago
py-scikit-bio biology/py-scikit-bio: Broken on aarch64 2 months ago
py-xenaPython One more small cleanup, forgotten yesterday. 1 year ago
pyfasta biology: remove 'Created by' lines 3 weeks ago
python-nexus biology: remove 'Created by' lines 3 weeks ago
rainbow One more small cleanup, forgotten yesterday. 1 year ago
rampler One more small cleanup, forgotten yesterday. 1 year ago
readseq biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint 1 year ago
recombine biology: remove 'Created by' lines 3 weeks ago
ruby-bio biology: remove 'Created by' lines 3 weeks ago
rubygem-bio biology: remove 'Created by' lines 3 weeks ago
rubygem-bio-executables biology: remove 'Created by' lines 3 weeks ago
rubygem-bio-old-biofetch-emulator biology: remove 'Created by' lines 3 weeks ago
rubygem-bio-shell biology: remove 'Created by' lines 3 weeks ago
sam2pairwise biology/sam2pairwise: Show pairwise alignment for each read in a SAM file 11 months ago
samtools biology: remove 'Created by' lines 3 weeks ago
scrm One more small cleanup, forgotten yesterday. 1 year ago
seaview biology: remove 'Created by' lines 3 weeks ago
seqan biology: remove 'Created by' lines 3 weeks ago
seqan-apps biology: remove 'Created by' lines 3 weeks ago
seqan1 biology: remove 'Created by' lines 3 weeks ago
seqan3 biology/seqan3: Update 3.1.0 -> 3.2.0 2 months ago
seqio biology: remove 'Created by' lines 3 weeks ago
seqkit all: Bump PORTREVISION after Go update 1 week ago
seqtk biology/seqtk: Update to 1.3 8 months ago
sigviewer misc/: Update 0.99.6-2 -> 0.991 12 months ago
sim4 biology: remove 'Created by' lines 3 weeks ago
slclust One more small cleanup, forgotten yesterday. 1 year ago
smithwaterman One more small cleanup, forgotten yesterday. 1 year ago
snpeff cleanup: remove expired versions of OpenJDK (12 through 16) 3 months ago
spoa devel/cpu_features: Install cmake files, install headers into a dedicated directory 7 months ago
sra-tools science/hdf5: bump PORTREVISION of consumers 3 weeks ago
stacks One more small cleanup, forgotten yesterday. 1 year ago
star biology/star: Broken on systems where OpenMP isn't enabled 3 weeks ago
stringtie One more small cleanup, forgotten yesterday. 1 year ago
subread One more small cleanup, forgotten yesterday. 1 year ago
tRNAscan-SE biology: remove 'Created by' lines 3 weeks ago
tabixpp One more small cleanup, forgotten yesterday. 1 year ago
taxonkit all: Bump PORTREVISION after Go update 1 week ago
treekin biology/treekin: Unbreak 10 months ago
treepuzzle biology: remove 'Created by' lines 3 weeks ago
trimadap Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 10 months ago
trimmomatic biology: remove 'Created by' lines 3 weeks ago
ucsc-userapps biology: remove 'Created by' lines 3 weeks ago
ugene biology/ugene: Correct BROKEN message 1 week ago
unikmer all: Bump PORTREVISION after Go update 1 week ago
vcf-split biology/vcf-split: Update to 0.1.5 2 months ago
vcf2hap biology/vcf2hap: Update to 0.1.6 2 months ago
vcflib Fix CONFLICTS_INSTALL in benchmarks and biology 1 month ago
vcftools biology/vcftools: Add CPE information 11 months ago
velvet biology: remove 'Created by' lines 3 weeks ago
viennarna biology/viennarna: Update 2.5.0 -> 2.5.1 2 weeks ago
vsearch biology/vsearch: Update to 2.21.1 7 months ago
vt One more small cleanup, forgotten yesterday. 1 year ago
wise biology: remove 'Created by' lines 3 weeks ago
Makefile biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale genome searching 5 days ago